Pathway Tools Bioinformatics SoftwarePathway Tools is a comprehensive systems-biology software system that is associated with the BioCyc database collection and supports several use cases in bioinformatics:
Pathway Tools Components
Please see the Pathway Tools Overview document for more details on the capabilities of the software. Pathway Tools was developed by Peter D. Karp and coworkers at the Bioinformatics Research Group at SRI International.
Pathway Tools AvailabilityPathway Tools is freely available for research purposes to academic, non-profit, and government institutions, and is available for a
Pathway Tools PublicationsContributions to Pathway ToolsWe solicit contributions of new functionality to Pathway Tools. This is by no means an exclusive list, but rather a set of ideas for what might be contributed. Contributions can be integrated directly into the Pathway Tools build at SRI, or can be distributed separately by their authors for loading into Pathway Tools. Pathway Tools source code is available. Interested? Contact .
Past ContributorsWe gratefully acknowledge the following contributions:
Pathway Tools User Group Meetings
Additional Pathway Tools Information
Contact UsTo report software bugs or for other questions, please contact us at .Subscribe to the Pathway Tools Mailing List. Mailing list members receive periodic news and updates about Pathway Tools, such as announcements regarding new releases of the software and databases. The mail volume is 1-2 announcements per month. To subscribe to the Pathway Tools mailing list, send an email to with the word subscribe in the Subject. To unsubscribe, send an email to with the word unsubscribe in the Subject. Funding SourcesThe development of Pathway Tools is funded by grants R01AI160719 and 1R24GM150703 from the National Institutes of Health; and by grant NSF2109898 from the National Science Foundadtion.
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